Module	Section	Sample Name	Source
Picard	DuplicationMetrics	6EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-s	/data/m/ea2/map/6EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smd.metrics
Picard	DuplicationMetrics	4EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-s	/data/m/ea2/map/4EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smd.metrics
Picard	DuplicationMetrics	5EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-s	/data/m/ea2/map/5EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smd.metrics
QualiMap	coverage_histogram	5EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/5EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	6EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/6EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	4EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/4EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	insert_size_histogram	5EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/5EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	6EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/6EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	4EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/4EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	genome_results	6EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | asm_pair-smds	/data/m/ea2/map/6EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/genome_results.txt
QualiMap	genome_results	5EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | asm_pair-smds	/data/m/ea2/map/5EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/genome_results.txt
QualiMap	genome_results	4EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | asm_pair-smds	/data/m/ea2/map/4EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/genome_results.txt
QualiMap	mapped_gc_distribution	5EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/5EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	6EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/6EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	4EA_L7_R1_001_dedup.fastq.gz | bowtie2 | asm_pair-smds_stats | raw_data_qualimapReport | asm_pair-smds_stats	/data/m/ea2/map/4EA_L7_R1_001_dedup.fastq.gz/bowtie2/asm_pair-smds_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
